Dr. Vered Padler-Karavani Lab

Below we are forwarding you to the most comprehensive websites for Glycorelated research.

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Database of anti-glycan antibodies and lectin reagents called the Database of Anti-Glycan Reagents or DAGR

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Functional Glycomics Gateway

The Functional Glycomics Gateway is a comprehensive resource for functional glycomics research brought to you by the Consortium for Functional Glycomics (CFG).

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Carbohydrate databases

• KEGG-Glycan KEGG

• GLYCOSCIENCES.de DKFZ-Heidelberg

• CFG-Glycan Database

• GlycoSuite Proteome Systems

• Bacterial Carbohydrate Structure DataBase

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Glycan topology description

• LINUCS Linear encoding of sugars

• CabosML Carbohydrate sequence markup Language

• KegDraw

• LiGraph Graphical representation

 

Glycan 3D modelling

• GLYCOSCIENCES modelling toolbox

• GLYCAM Generation of 3D structures

 

Glycans in PDBs

• PDB - repository DB of all 3D bio-structures

• dbPTM: DB of protein post-translational modification

• PDB2LINUCS Glycoproteins in PDB

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Glycan Processing Pathways & Enzymes

• GGDB human glycogenes

• KEGG orthology glycosyltransferases

• CAZy carbohydrate active enzymes

• KEGG pathway carbohydrate metabolism

• SphinGOMAP pathways of sphingolipid biosynthesis

 

Glycan Binding Proteins

• Genomics Resource for Animal Lectins

• Lectines 3D structure of lectins

• CFG-GBP-DB Glycan binding protein

• GlycoEpitope DB Antibodies for glyco epitopes

• CFG- Microarray Data Glycogene chip

• LectinDB: Plant lectin Database

• SugarBindDB: Bacterial lectin Database

 

Prediction of glycosylation sites

• Isoform Specific O-Glycosylation Prediction (ISOGlyP)

• NetNGlyc N-glycosylation

• NetOGlyc O-glycosylation

• YinOYang Glyco-, phosphorylation

• big-PIPredictor GPI-anchor prediction

 

Nomenclature​

• CFG Nomenclature

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GlyCosmos Portal

Integration of diverse omics data including glycogenes, glycoconjugates (such as glycoproteins and glycolipids), molecular structures, and pathways. This portal site  include the development of a new glycoconjugate repository GlyComb, as well as an integrated and curated database under GlyCosmos which provides context for the glycans and glycoconjugates registered in the GlyTouCan and GlyComb repositories, respectively. In addition, this project involve development of standard notations (WURCS) and ontologies (GlycoRDF, Glycoconjugate ontology). By using Sematic Web technologies, GlyCosmos  also integrate other -omics databases from the fields of genomics, proteomics, metabolomics and lipidomics.

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GlycanBuilder

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Carbohydrate Builder

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National Center for Functional Glycomics (NCFG) 

The National Center for Functional Glycomics (NCFG) at Emory University School of Medicine, is one of four Glycomics-related Biomedical Technology Resource Centers (BTRC) in the U.S., funded by the National Institutes of Health. Analogous to Genomics and Proteomics, Glycomics focuses on defining the structures and functions of complex carbohydrates, as found in glycoproteins, glycolipids, and glycosaminoglycans. The specific focus of the NCFG is on technology development in the glycosciences with an emphasis on exploring the molecular mechanisms of glycan recognition by proteins important in human biology and disease. 

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• Essentials of Glycobiology textbook 

• NIH 

• Current Protocols issues      

• Pubmed

• KEGG Glycan

• Congenital Disorders of Glycosylation

• CAZy Carbohydrate Active Enzymes

• Predicting O-glycosylation Sites

• GLYCO3D

• CarbBank

• Complex Carbohydrate Research Center at UGA

• National Center for Glycomics and Glycoproteomics

• Glycobiology Research and Training Center at UCSD

• Society for Glycobiology

• Gordon Research Conference on Glycobiology

• Glycan Mass